Home Projects scvi-tools
scvi-tools
Python

scvi-tools

Deep probabilistic analysis of single-cell and spatial omics data

by scverse · GitHub
Stars
Forks
Created
Last commit
Category
Language
cite-seqdeep-generative-modeldeep-learningBSD-3-ClausePython
View on GitHub
In plain words

Analyze single-cell and spatial data to uncover insights in biological research using probabilistic modeling.

You maintain this project?

Claim its page: indexed whatever its rank, translated into six languages, and enriched with what you write yourself.

Claim this page →
scvi-tools — GitHub preview card
📈 Star history
1 6631 662
2026-07-202026-08-31
📈 Track scvi-tools

Get an email alert on its next release or when it starts trending — never miss the moment.

Free · no card · unsubscribe anytime
Get email alerts →
📄 About

Deep probabilistic analysis of single-cell and spatial omics data

scvi-tools has 1.7k stars on GitHub. It has been forked 467 times. scvi-tools is written mainly in Python. It has been in active development since 2017. scvi-tools is available under the BSD-3-Clause license. Its main topics are cite-seq, deep-generative-model, deep-learning, human-cell-atlas.

Frequently asked questions

What is scvi-tools?

Deep probabilistic analysis of single-cell and spatial omics data

Is scvi-tools open source?

scvi-tools is an open-source project. It is released under the BSD-3-Clause license.

Is scvi-tools free?

Yes. scvi-tools is free and open source — you can use, modify and self-host it.

What license does scvi-tools use?

scvi-tools is available under the BSD-3-Clause license.

What language is scvi-tools written in?

scvi-tools is written mainly in Python.

🏅 Maintainer of this project?
olud.ai badge — scvi-tools

Add this live badge to your README — your GitHub stars and directory rank, refreshed daily.

[![olud.ai](https://olud.ai/badge.php?tool=scverse-scvi-tools)](https://olud.ai/project/scverse-scvi-tools.html)
More badge options →
🧬 Related projects